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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2696015
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGGEGGED EIQFLRTEDE VVLQCIATIH KEQRKFCLAA EGLGNRLCFL EPTSEAKYIP  60
   61 PDLCVCNFVL EQSLSVRALQ EMLANTGENG GEGAAQGGGH RTLLYGHAVL LRHSFSGMYL 120
  121 TCLTTSRSQT DKLAFDVGLR EHATGEACWW TIHPASKQRS EGEKVRIGDD LILVSVSSER 180
  181 YLHLSVSNGN IQVDASFMQT LWNVHPTCSG SSIEEGYLLG GHVVRLFHGH DECLTIPSTD 240
  241 QNDSQHRRIF YEAGGAGTRA RSLWRVEPLR ISWSGSNIRW GQAFRLRHLT TGHYLALTED 300
  301 QGLILQDRAK SDTKSTAFSF RASKELKEKL DSSHKRDIEG MGVPEIKYGD SVCFVQHIAS 360
  361 GLWVTYKAQD AKTSRLGPLK RKVILHQEGH MDDGLTLQRC QREESQAARI IRNTTALFSQ 420
  421 FVSGNNRTAA PITLPIEEVL QTLQDLIAYF QPPEEEMRHE DKQNKLRSLK NRQNLFKEEG 480
  481 MLALVLNCID RLNVYNSVAH FAGIAREESG MAWKEILNLL YKLLAALIRG NRNNCAQFSN 540
  541 NLDWLISKLD RLESSSGILE VLHCILTESP EALNLIAEGH IKSIISLLDK HGRNHKVLDI 600
  601 LCSLCLCNGV AVRANQNLIC DNLLPRRNLL LQTRLINDVT SIRPNIFLGV AEGSAQYKKW 660
  661 YFELIIDQVD PFLTAEPTHL RVGWASSSGY APYPGGGEGW GGNGVGDDLY SYGFDGLHLW 720
  721 SGRIPRAVAS INQHLLRSDD VGKLLPGPRG CPASHSASMG SPCRGCLENF NTDGLFFPVM 780
  781 SFSAGVKVRF LMGGRHGEFK FLPPSGYAPC YEALLPKEKM RLEPVKEYKR DADGIRDLLG 840
  841 TTQFLSQASF IPCPVDTSQV ILPPHLEKIR DRLAENIHEL WGMNKIELGW TFGKIRDDNK 900
  901 RQHPCLVEFS KLPETEKNYN LQMSTETLKT LLTLGCHIAH VNPAAEEDLK KVKLPKNYMM 960
  961 SNGYKPAPLD LSDVKLLPPQ EILVDKLAEN AHNVWAKDRI KQGWTYGIQQ DLKNKRNPRL1020
 1021 VPYALLDERT KKSNRDSLRE AVRTFVGYGY NIEPSDQELA DSAVEKVSID KIRFFRVERS1080
 1081 YPVRSGKWYF EFEVVTGGDM RVGWARPGCR PDVELGADDQ AFVFEGNRGQ RWHQGSGYFG1140
 1141 RTWQPGDVVG CMINLDDASM IFTLNGELLI TNKGSELAFA DYEIENGFVP ICCLGLSQIG1200
 1201 RMNLGTDAST FKFYTMCGLQ EGFEPFAVNM NRDVAMWFSK RLPTFVNVPK DHPHIEVMRI1260
 1261 DGTMDSPPCL KVTHKTFGTQ NSNADMIYCR LSMPVECHSS FSHSPCLDSE AFQKRKQMQE1320
 1321 ILSHTTTQCY YAIRIFGGQD PSCVWVGWVT PDYHLYSEKF DLNKNCTVTV TLGDERGRVH1380
 1381 ESVKRSNCYM VWGGDIVASS QRSNRSNVDL EIGCLVDLAM GMLSFSANGK ELGTCYQVEP1440
 1441 NTKVFPAVFL QPTSTSLFQF ELGKLKNAMP LSAAIFRSEE ENPVPQCPPR LDVQTIQPVL1500
 1501 WSRMPNSFLK VETERVSERH GWVVQCLEPL QMMALHIPEE NRCVDILELC EQEDLMRFHY1560
 1561 HTLRLYSAVC ALGNSRVAYA LCSHVDLSQL FYAIDNKYLP GLLRSGFYDL LISIHLASAK1620
 1621 ERKLMMKNEY IIPITSTTRN ICLFPDESKR HGLPGVGLRT CLKPGFRFST PCFVVTGEDH1680
 1681 QKQSPEIPLE SLRTKALSML TEAVQCSGAH IRDPVGGSVE FQFVPVLKLI GTLLVMGVFD1740
 1741 DDDVRQILLL IDPSVFGEHS AGTEEGAEKE EVTQVEEKAV EAGEKAGKEA PVKGLLQTRL1800
 1801 PESVKLQMCE LLSYLCDCEL QHRVEAIVAF GDIYVSKLQA NQKFRYNELM QALNMSAALT1860
 1861 ARKTKEFRSP PQEQINMLLN FQLGENCPCP EEIREELYDF HEDLLLHCGV PLEEEEEEEE1920
 1921 DTSWTGKLCA LVYKIKGPPK PEKEQPTEEE ERCPTTLKEL ISQTMICWAQ EDQIQDSELV1980
 1981 RMMFNLLRRQ YDSIGELLQA LRKTYTISHT SVSDTINLLA ALGQIRSLLS VRMGKEEELL2040
 2041 MINGLGDIMN NKVFYQHPNL MRVLGMHETV MEVMVNVLGT EKSQIAFPKM VASCCRFLCY2100
 2101 FCRISRQNQK AMFEHLSYLL ENSSVGLASP SMRGSTPLDV AASSVMDNNE LALSLEEPDL2160
 2161 EKVVTYLAGC GLQSCPMLLA KGYPDVGWNP IEGERYLSFL RFAVFVNSES VEENASVVVK2220
 2221 LLIRRPECFG PALRGEGGNG LLAAMQGAIK ISENPALDLP SQGYKREVST EDDEEEEEIV2280
 2281 HMGNAIMSFY SALIDLLGRC APEMHLIQTG KGEAIRIRSI LRSLVPTEDL VGIISIPLKL2340
 2341 PSLNKDGSVS EPDMAGNFCP DHKAPMVLFL DRVYGIKDQT FLLHLLEVGF LPDLRASASL2400
 2401 DTVSLSTTEA ALALNRYICS AVLPLLTRCA PLFGGTEHCT SLIDSTLQTI YRLSKGRSLT2460
 2461 KAQRDTIEEC LLAICNHLRP SMLQQLLRRL VFDVPQLNEY CKMPLKLLTN HYEQCWKYYC2520
 2521 LPSGWGSYGL AVEEELHLTE KLFWGIIDSL SHKKYDPDLF RMALPCLSAI AGALPPDYLD2580
 2581 SRITATLEKQ ISVDADGNFD PKPINTMNFS LPEKLEYIVT KYAEHSHDKW ACDKSQSGWK2640
 2641 YGISLDENVK THPLIRPFKT LTEKEKEIYR WPARESLKTM LAVGWTVERT KEGEALVQQR2700
 2701 ENEKLRSVSQ ANQGNSYSPA PLDLSNVVLS RELQGMVEVV AENYHNIWAK KKKLELESKG2760
 2761 GGSHPLLVPY DTLTAKEKFK DREKAQDLFK FLQVNGIIVS RGMKDMELDA SSMEKRFGYK2820
 2821 FLKKILKYVD SAQEFIAHLE AIVSSGKTEK SPRDQEIKFF AKVLLPLVDQ YFTSHCLYFL2880
 2881 SSPLKPLSSS GYASHKEKEM VAGLFCKLAA LVRHRISLFG SDSTTMVSCL HILAQTLDTR2940
 2941 TVMKSGSELV KAGLRAFFEN AAEDLEKTSE NLKLGKFTHS RTQIKGVSQN INYTTVALLP3000
 3001 ILTSIFEHVT QHQFGMDLLL GDVQISCYHI LCSLYSLGTG KNIYVERQRP ALGECLASLA3060
 3061 AAIPVAFLEP TLNRYNPLSV FNTKTPRERS ILGMPDTVED MCPDIPQLEG LMKEINDLAE3120
 3121 SGARYTEMPH VIEVILPMLC NYLSYWWERG PENLPPSTGP CCTKVTSEHL SLILGNILKI3180
 3181 INNNLGIDEA SWMKRIAVYA QPIISKARPD LLRSHFIPTL EKLKKKAVKT VQEEEQLKAD3240
 3241 GKGDTQEAEL LILDEFAVLC RDLYAFYPML IRYVDNNRSN WLKSPDADSD QLFRMVAEVF3300
 3301 ILWCKSHNFK REEQNFVIQN EINNLAFLTG DSKSKMSKSG GQDQERKKTK RRGDLYSIQT3360
 3361 SLIVAALKKM LPIGLNMCTP GDQELISLAK SRYSHRDTDE EVREHLRNNL HLQEKSDDPA3420
 3421 VKWQLNLYKD VLKSEEPFNP EKTVERVQRI SAAVFHLEQV EQPLRSKKAV WHKLLSKQRK3480
 3481 RAVVACFRMA PLYNLPRHRS INLFLHGYQR FWIETEEYSF EEKLVQDLAK SPKVEEEEEE3540
 3541 ETEKQPDPLH QIILYFSRNA LTERSKLEDD PLYTSYSSMM AKSCQSGEDE EEDEDKEKTF3600
 3601 EEKEMEKQKT LYQQARLHER GAAEMVLQMI SASKGEMSPM VVETLKLGIA ILNGGNAGVQ3660
 3661 QKMLDYLKEK KDAGFFQSLP GLMQSCSVLD LNASERQNKA EGLGMVTEEG TLIVRERGEK3720
 3721 VLQNDEFTRD LFRFLQLLCE GHNSDFQNFL RTQMGNTTTV NVIISTVDYL LRLQESISDF3780
 3781 YWYYSGKDII DESGQHNFSK ALAVTKQIFN SLTEYIQGPC IGNQQSLAHS RLWDAVVGFL3840
 3841 HVFANMQMKL SQDSSQIELL KELLDLLQDM VVMLLSLLEG NVVNGTIGKQ MVDTLVESST3900
 3901 NVEMILKFFD MFLKLKDLTS SDTFKEYDPD GKGIISKKEF QKAMEGQKQY TQSEIDFLLS3960
 3961 CAEADENDMF NYVDFVDRFH EPAKDIGFNV AVLLTNLSEH MPNDSRLKCL LDPAESVLNY4020
 4021 FGPYLGRIEI MGGAKKIERV YFEISESSRT QWEKPQVKES KRQFIFDVVN EGGEQEKMGL4080
 4081 FVNFCEDTIF EMQLASQISE SDSADRPEEE EEDEDSSYVL EIAGEEEEDG SLEPASAFAM4140
 4141 ACASVKRNVT DFLKRATLKN LRKQYRNVKK MTAKELVKVL FSFFWMLFVG LFQLLFTILG4200
 4201 GIFQILWSTV FGGGLVEGAK NIRVTKILGD MPDPTQFGIH DDTMEAERAE VMEPGITTEL4260
 4261 VHFIKGEKGD TDIMSDLFGL HPKKEGSLKH GPEVGLGDLS EIIGKDEPPT LESTVQKKRK4320
 4321 AQAAEMKAAN EAEGKVESEK ADMEDGEKED KDKEEEQAEY LWTEVTKKKK RRCGQKVEKP4380
 4381 EAFTANFFKG LEIYQTKLLH YLARNFYNLR FLALFVAFAI NFILLFYKVT EEPLEEETED4440
 4441 VANLWNSFND EEEEEAMVFF VLQESTGYMA PTLRALAIIH TIISLVCVVG YYCLKVPLVV4500
 4501 FKREKEIARK LEFDGLYITE QPSEDDIKGQ WDPLVINTPS FPNNYWDKFV KRKVINKYGD4560
 4561 LYGAERIAEL LGLDKNALDF SPVEETKAEA ASLVSWLSSL DMKYHIWKLG VVFTDNSFLY4620
 4621 LAWYTTMSVL GHYNNFFFAA HLLDIAMGFK TLRTILSSVT HNGKQLVLTV GLLAVVVYLY4680
 4681 TVVAFNFFRK FYNKSEDDDE PDMKCDDMMT CYLFHMYVGV RAGGGIGDEI EDPAGDPYEM4740
 4741 YRIVFDITFF FFVIVILLAI IQGLIIDAFG ELRDQQEQVR EDMETKCFIC GIGNDYFDTT4800
 4801 PHGFETHTLQ EHNLANYLFF LMYLINKDET EHTGQESYVW KMYQERCWDF FPAGDCFRKQ4860
 4861 YEDQLG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle