YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21951818
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELTSVDASA VLDLWGNGSV PGSLLNESIL NGTCFLNALN CTNGTDAGNR AGTSMAGILI  60
   61 PLIYIIVCVV GLGGNSLVIH IVLHYSKTES VTNIYILNLA IADELFMLGL PFLAVQNAMH 120
  121 SWPFGSFTCR LVMTVDGINQ FTSIFCLTVM SIDRYLAVVH PIRSSKWRRP QVAKAENGTI 180
  181 WAVSFLVVLP VVIFANVQRE GGICNIIWPE PANIWGAAFI IYTSTVGFFF PLLVICMCYL 240
  241 LIVIKIRSSG KKVHATSTKR RKSERKVTRM VVIVVAVFVF CWMPFYALNI INLVESLRDE 300
  301 PQGLHLFVVV LSYANSCANP IVYCFLSDNF KRGFRKALCR SSRRVENHES TEQQNQEERR 360
  361 RVLMPRESLK RAVRNEEDEE EEEYREEVTE MTEICRITQN GNGSRQAESS RALFLERPSG 420
  421 AGVSETSSPD RRGTAGDVKG PGFGTAATLL NGAKNGNVKT LPEEPVEKNS SLEISYL

Type	Start	End	Confidence
Non-Cytoplasmic	1	59	0.78
Transmembrane Helix	60	83	0.89
Cytoplasmic	84	93	0.81
Transmembrane Helix	94	115	0.90
Non-Cytoplasmic	116	136	0.86
Transmembrane Helix	137	158	0.84
Cytoplasmic	159	177	0.93
Transmembrane Helix	178	197	0.95
Non-Cytoplasmic	198	217	0.91
Transmembrane Helix	218	243	0.91
Cytoplasmic	244	266	0.93
Transmembrane Helix	267	288	0.92
Non-Cytoplasmic	289	303	0.91
Transmembrane Helix	304	326	0.79
Cytoplasmic	327	477	0.84