YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31505504
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.50
Transmembrane Helix	8	28	0.34
Non-Cytoplasmic	29	42	0.42
Transmembrane Helix	43	66	0.79
Cytoplasmic	67	72	0.40
Transmembrane Helix	73	93	0.88
Non-Cytoplasmic	94	98	0.46
Transmembrane Helix	99	121	0.88
Cytoplasmic	122	134	0.49
Transmembrane Helix	135	158	0.80
Non-Cytoplasmic	159	164	0.53
Transmembrane Helix	165	185	0.94
Cytoplasmic	186	524	0.67
Transmembrane Helix	525	541	0.67
Non-Cytoplasmic	542	568	0.73
Transmembrane Helix	569	589	0.86
Cytoplasmic	590	600	0.83
Transmembrane Helix	601	620	0.95
Non-Cytoplasmic	621	627	0.71
Transmembrane Helix	628	649	0.88
Cytoplasmic	650	664	0.85
Transmembrane Helix	665	686	0.89
Non-Cytoplasmic	687	694	0.77
Transmembrane Helix	695	717	0.89
Cytoplasmic	718	745	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAALVAIV ASIGNLLQGW DNATISAALL YIKKEFKLES EPTVEGLIVA MSLIGATIIT  60
   61 TFSGPVSDWI GRLPMLILSS VLYFVSSLIM LWSPNVYVLL LARLINGFGV GLAVTLVPLY 120
  121 ISETAPPEIR GLLNTLPQFS GSGGMFLSYC MVFGMSLLPS PDWRIMLGVL ALPSLFFFGL 180
  181 TIFYLPESPR WLVSKGRMAE AKKVLQRLRG KDDVTGEMAL LVEGLEVGGD TFIEEYIIGP 240
  241 AIEPADDHVA DGDRERIILF GPEEGQSWIA RPSKGSSMLG SVLSIGSRHG SMVNQNLPLT 300
  301 DPIVTLFGSV HENISLAGGS MRRIVPSKFD SMISITDQHP KTEQWDEENL HRDNEEYATD 360
  361 GAASDYENNV HSPLLSRQNT SAEGKGIAHH GHRGSALGLR RRSLSDEGGE AATSTGIGGG 420
  421 WQLAWKWSER EGEDGKKEGS FKRIYLHQEG VAGSRRGSVV SLPGGGDASE GGKFIHAAAL 480
  481 VSQSALYPRD ITEQRMAGPA TMHPSEAAAK VPSWRDLFEP GVRRALLVGI GIQILQQFAG 540
  541 INGVLYYTPQ IMEQAGVAVL ISNLGLSSAS ASILISSVTA LLMLPSIGLA MRLMDVSGRR 600
  601 FLLLSTIPVL IASLIVLVVS NVIELGTVVH AVLSTISVIT YLCCFKMGFG PIPNILCAEF 660
  661 FPTRVRGICI AICALIFWVG DIIVTYSLPV MLNAIGLEGV FGIYAVACAI AFVFVYLKVP 720
  721 ETKGMPLEVI TEFFAVGAKQ AVAKA