YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6531617, gi\|6...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPQSNAAAA AQLLXPVAML PLLQRCSCKW QPGIEWECQW NGNAVVAATG NGNGGNPGQN  60
   61 NNNNNGNNSG NSNNNSNNNV SSVQHVANAV AAAVIANEHH NHLNSLKARF QPASSGKSTS 120
  121 NSKEIICPDD KYKEEGDIWN VEAQTAFLGP NLWDKTLPYD ADLKVTQYAD LDEFLSENNI 180
  181 PDGLPGTHLG HSSGLGHRSD SLGHAAGLSL GLGHITTKRE RSPSPSDCIS PDTLNPPSPA 240
  241 ESTFSFASSG RDFDPRTRAF SDEELKPQPM IKKSRKQFVP DELKDDKYWA RRRKNNIAAK 300
  301 RSRDARRQKE NQIAMRARYL EKENATLHQE VEQLKQENMD LRARLSKFQD V

Type	Start	End	Confidence
Signal Peptide	1	28	0.82
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	351	0.99