YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TUN_ARATH
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRGRACVV VLGDLGRSPR MQYHALSLAR QASFQVDIVA YGGSIPHEAV LNHPSIHIHT  60
   61 MAQPRFIQYF PKILYPVTLL LKAFIQFTML LWFLFVKVPA PDIFLVQNPP SVPTLIAVKW 120
  121 ASSWRRAAFV VDWHNFGYTL LALSLGRNNL LVSLYRWSEN HYGKMATGSL CVTKAMQHEL 180
  181 DQNWGVRAKV LYDQPPEFFR PALLEERHEL FCRVRKDLCH PIGVYDFISR ELENQELNET 240
  241 LFTTKFNADI SLKQNRPALV VSSTSWTPDE NFGILLEAAV MYDRRVAARS KGSETAEISE 300
  301 EQHHYPNLLF IITGKGPEKE MYEEKIKRLN LRHVAFRTMW LAAEDYPLLL GSADLGVCLH 360
  361 TSSSGLDLPM KVVDMFGCGL PVCSVSYSCI QELVKDGKNG LLFSSSSELA DQLLILFKGF 420
  421 PGNCDALMSL KAGAMETGSS GRWATEWEDC AKPLITQVVS QIADS

Type	Start	End	Confidence
Cytoplasmic	1	72	0.73
Transmembrane Helix	73	96	0.66
Non-Cytoplasmic	97	465	0.77