YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDI52_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLKLLLCW ISFLTLSISI SASSDDQFTL DGTVLELTDS NFDSAISTFD CIFVDFYAPW  60
   61 CGHCKRLNPE LDAAAPILAK LKQPIVIAKL NADKYSRLAR KIEIDAFPTL MLYNHGVPME 120
  121 YYGPRKADLL VRYLKKFVAP DVAVLESDST VKEFVEDAGT FFPVFIGFGL NESIISGLGR 180
  181 KYKKKAWFAV SKEVSEDTMV SYDFDKAPAL VANHPTYNEH SVFYGPFEDG FLEEFVKQSF 240
  241 LPLILPINHD TLKLLKDDER KIVLTIVEDE THESLEKLYK ALRAAAHANR DLVFGYVGVK 300
  301 QFEEFVDSFH VDKKTNLPKI VVWDGDEEYD QVTGIETITQ EEDHLTQVSR FLEGYREGRT 360
  361 EKKKINGPSF MGFINSMIGI RSVYILVFLV AVIMMLRSLG QVEEPTGVRT ATAVRERVDQ 420
  421 ATTVPEDESS EHKPSDKKED

Type	Start	End	Confidence
Signal Peptide	1	24	0.96
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	376	0.93
Transmembrane Helix	377	399	0.75
Cytoplasmic	400	440	0.78