YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOGT1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVEFAPLNI PLARRLQTAA VLHWLLSFLL FAQVCLGIIV FLIIYNYWFL YLPYLTWLYF  60
   61 DWQTPEQGGR RSEWVRNWAI WRYFKDYFPI HLIKTWDLDP SHNYIFGFHP HGVLVVGAFG 120
  121 NFCTNYSAFK ELFPGFTSYL HVLPYWFRCP LFREYLMSSG PVSVSKKSVC HVLSKEGGGN 180
  181 ISVIVLGGAE ESLDAHPGKF TLFIRQRKGF VKIALTHGAY LVPVFSFGEN ELFKQVSNPE 240
  241 GSWLRNVQEK LQKIMGFALP LFHARGIFQY NFGLIPYRKP IHTVVGRPIP VRQTLNPTSE 300
  301 QIEELHQTYM EELRKLFEEH KGKYGIPENE TLIFR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	45	0.94
Non-Cytoplasmic	46	105	0.94
Transmembrane Helix	106	126	0.83
Cytoplasmic	127	335	0.65