YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEQICILK PDDEEEMESP SPSKTEENLG VVPLSCAFTR QEHCVSETKE REESTRRLSS  60
   61 LIFLYLIVMS VQIVGGFKAN SLAVMTDAAH LLSDVAGLCV SLLAIKVSSW EANPRNSFGF 120
  121 KRLEVLAAFL SVQLIWLVSG VIIHEAIQRL LSRSREVNGE IMFGISAFGF FMNLVMVLWL 180
  181 GHNHSHHHHD HHHHHHNHKH QHQHHHKEVV AEEEEEEMNP LKGEKSSSKE MNINIQGAYL 240
  241 HAMADMIQSL GVMIGGGIIW VKPKWVLVDL ICTLVFSAFA LAATLPILKN IFGILMERVP 300
  301 RDMDIEKLER GLKRIDGVKI VYDLHVWEIT VGRIVLSCHI LPEPGASPKE IITGVRNFCR 360
  361 KSYGIYHATV QVESE

Type	Start	End	Confidence
Cytoplasmic	1	60	0.96
Transmembrane Helix	61	79	0.93
Non-Cytoplasmic	80	87	0.77
Transmembrane Helix	88	110	0.78
Cytoplasmic	111	124	0.81
Transmembrane Helix	125	147	0.87
Non-Cytoplasmic	148	160	0.82
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	237	0.87
Transmembrane Helix	238	260	0.88
Non-Cytoplasmic	261	266	0.71
Transmembrane Helix	267	288	0.91
Cytoplasmic	289	375	0.85