YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53850515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSQDHKIL FNGVRKYVIM EKKYVFSFVI TSLVCVVLLA TSFNIGLMSS LRPPINGTLS  60
   61 SFPKNDSNVV GKQPREDDKL PRFAYLVSGS KGDLESLWRT LRALYHPRNQ YIVHLDLESP 120
  121 VDERSELASR ISNDPMYSKA GNVYMITKAN LVTYTGPTMV ANTLHACAIL LKRTPDWDWF 180
  181 INLSASDYPL VTQDDLIHTF STLDRNLNFI EHTSSLGWKY KKRAMPLIID PGLYMLNKSN 240
  241 VLLVRPNRSL PSAFKLFTAW MALSHAFVEY IIYGWDNLPR TLLMYYTNFV SSPEGYFHTV 300
  301 ICNVPEFSKT AVNHDLHYIA WDKPPRQHPR MLSQRDMGKM ISSGSAFGRK FRRNDTVLDK 360
  361 IDKELLIRIN EDGFTPGGWC GGKPECSVVE DVARIRPSSG AVRLKELVDR LVTEAKLGKN 420
  421 QCV

Type	Start	End	Confidence
Cytoplasmic	1	23	0.96
Transmembrane Helix	24	47	0.90
Non-Cytoplasmic	48	423	0.93