YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16751750
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKTSVDKRR VCVIGAGTAG LCALKNSLEA GLDAVAYERG TEIGGTWIFS EEMPKDEYDE  60
   61 VHSSMYEGLR TNLPKEVMGY PDYSYPDDIT ESFITSNQVL EFLRSYAEHF KVKPHIKLQH 120
  121 EVIRVRPRLD DWEVYVWDHS TDTCDPVYYD FVYVCNGHYT EPDLPEVEGL DLFEGNKMHS 180
  181 HLYRKADKFK DARVLIIGAG PSGMDITNHV RLAAKQVFLS HHLSTTPNTA FMGNVTQKPD 240
  241 VKRFTKDGAV FTDGSTESFD HVMFCTGYKY TFPCLSTDVG VQVIDNFVQP LWKHCININH 300
  301 PTMAFVGLPF NVIPTHIFDM QVPFTLKFFT GQRKFPSREQ MIADLEQEIG ERWGCGVRNQ 360
  361 KKAHQMGERQ FVYYNELASI AGIENIKPVI HKLMKDCGKK YIFELDTYRS NKYTILDDEN 420
  421 FLKNGEAIV

Type	Start	End	Confidence
Signal Peptide	1	30	0.74
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	429	0.99