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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|36244728
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALLSLLTA VAVATATPLD LSLRALPNAP DGYTPAKVSC PATRPSIRGA GSLSPNETSW  60
   61 LEIRRKNTVE PMTDLLGRLN LGFDAAGYID RVSSNASNLP NIAIAVSGGG YRALTNGAGA 120
  121 IKAFDSRTQG STQSGHLGGL LQSATYVSGL SGGGWLVGSV YLNNFTTIAD LQSGDHGNVW 180
  181 QFSTSILEGP KAKHLQFLST ADYWKDLLKA VDGKSDAGFN TSLTDYWGRA LSYQFINDRT 240
  241 GNGGLSYTWS SIALTDPFRR GEMPLPILVA DGRNPGELLI GSNSTVYEFN PWEFGSFDPS 300
  301 IFGFAPLEYL GSRFDNGQLP RGEPCVRGFD NAGFVMGTSS SLFNQFILRL NKTDLPDLAK 360
  361 DVFSKILTAI GRDGDDIAVY GPNPFYGYRN STAAYSRSRE LDVVDGGEDG QNIPLHPLIQ 420
  421 PVRHVDVIFA VDSSADGPYS WPNGSALVAT YERSLNSSGI GNGTVFPAVP DVNTFVNLGL 480
  481 NTRPTFFGCD PANLSAPAPL VVYLPNAPYS THSNTSTFQL AYSDSERDEI ITNGYNVVTR 540
  541 GDATVDKSWP SCVGCAILQR SMYRTNTSMP AVCNSCFKEY CWNGTVDSKT PRTYEPTLLL 600
  601 GSTSTNAAYT QGVTWLVSIL AVGVAMGMTA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle