YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53793724
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSVNIDQQ GKGGYVSDEV LGTFLPIVVY WVYSGLYLML GNMDNYRLHS KKDEDEKNLV  60
   61 SKKEVVKGVL LQQIVQAAVA TVLFALGLLS LDSTNALLWF PFTLVTGDDG ESGGDRHTSI 120
  121 FVLGRQLFIA MLMLDTWQYF MHRYMHQNKF LYKHIHAQHH RLIVPYAFGA LYNHPLEGLI 180
  181 LDTIGGALAF LVSGMSPRTS IFFFSFATIK TVDDHCGLWL PGNLFHIFFK NNSAYHDIHH 240
  241 QLYGTKYNYS QPFFVTWDMI LGTYMPYELE RRPEGGFEAK PVKDCKEH

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.71
Transmembrane Helix	20	41	0.79
Cytoplasmic	42	68	0.81
Transmembrane Helix	69	91	0.75
Non-Cytoplasmic	92	120	0.67
Transmembrane Helix	121	141	0.83
Cytoplasmic	142	161	0.67
Transmembrane Helix	162	176	0.41
Non-Cytoplasmic	177	177	0.40
Transmembrane Helix	178	202	0.64
Cytoplasmic	203	288	0.68