YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50198781, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYRKIKDED DHDVASDIES VKGKSHTVAS SNIAMATLGV GSSERINWKR KGVVTCALTI  60
   61 LTSSQAILIV WSKRAGKYEY SVTTANFLVE TLKCALSLLA LTRIWKNEGV TDDNRLSTTF 120
  121 DEVKVFPIPA ALYLFKNLLQ YYIFAYVDAP GYQILKNLNI ISTGVLYRII LKRKLSEIQW 180
  181 AGFILLCCGC TTAQLNSNSD RVLQTSLPGW TMAIVMALLS GFAGVYTEAI IKKRPSRNIN 240
  241 VQNFWLYVFG MAFNAVAIVI QDFDAVANKG FFHGYSFITL LMILNHALSG IAVSMVMKYA 300
  301 DNIVKVYSTS VAMLLTAVVS VFLFNFHLSL AFFLGSTVVS VSVYLHSAGK LR

Type	Start	End	Confidence
Cytoplasmic	1	177	0.70
Transmembrane Helix	178	195	0.93
Non-Cytoplasmic	196	206	0.82
Transmembrane Helix	207	230	0.86
Cytoplasmic	231	242	0.89
Transmembrane Helix	243	261	0.95
Non-Cytoplasmic	262	271	0.79
Transmembrane Helix	272	296	0.85
Cytoplasmic	297	302	0.91
Transmembrane Helix	303	324	0.88
Non-Cytoplasmic	325	329	0.66
Transmembrane Helix	330	348	0.86
Cytoplasmic	349	352	0.77