YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPEKKSQNF PPITECRDGE YDSIAADLDG TLLLSRSSFP YFMLVAVEAG SLLRGLILLL  60
   61 SLPFVIISYL FVSESLGIQI LIFISFAGLK IRDIELVSRA VLPRFYAADV RKDSFEVFDK 120
  121 CKRKVVVTAN PIVMVEAFVK DYLGGDKVLG TEIEVNPKTN RATGFVKKPG VLVGDLKRLA 180
  181 ILKEFGNESP DLGLGDRTSD HDFMSLCKKG YMVHATKSAT TIPKERLKNR IVFHDGRLAQ 240
  241 RPTPLNAIIT YLWLPFGFIL SIIRVYFNLP LPERFVRYTY EMLGIHLTIR GHRPPPPSPG 300
  301 TLGNLYVLNH RTALDPIIVA IALGRKICCV TYSVSRLSLM LSPIPAVALT RDRATDAANM 360
  361 RKLLEKGDLV ICPEGTTCRE EYLLRFSALF AELSDRIVPV AMNCKQGMFN GTTVRGVKFW 420
  421 DPYFFFMNPR PSYEATFLDR LPEEMTVNGG GKTPIEVANY VQKVIGAVLG FECTELTRKD 480
  481 KYLLLGGNDG KVESINNTKK

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	60	0.83
Non-Cytoplasmic	61	64	0.53
Transmembrane Helix	65	89	0.79
Cytoplasmic	90	246	0.92
Transmembrane Helix	247	267	0.91
Non-Cytoplasmic	268	500	0.89