YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18390097
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTAARALV ALLLVAVAVA DDGATLVEIK KSFRNVGNVL YDWAGDDYCS WRGVLCDNVT  60
   61 FAVAALNLSG LNLEGEISPA VGSLKSLVSI DLKSNGLSGQ IPDEIGDCSS LRTLDFSFNN 120
  121 LDGDIPFSIS KLKHLENLIL KNNQLIGAIP STLSQLPNLK ILDLAQNKLT GEIPRLIYWN 180
  181 EVLQYLDVKN NSLTGVIPDT IGNCTSFQVL DLSYNRFTGP IPFNIGFLQV ATLSLQGNKF 240
  241 TGPIPSVIGL MQALAVLDLS YNQLSGPIPS ILGNLTYTEK LYIQGNKLTG SIPPELGNMS 300
  301 TLHYLELNDN QLTGSIPPEL GRLTGLFDLN LANNHLEGPI PDNLSSCVNL NSFNAYGNKL 360
  361 NGTIPRSLRK LESMTYLNLS SNFISGSIPI ELSRINNLDT LDLSCNMMTG PIPSSIGSLE 420
  421 HLLRLNLSKN GLVGFIPAEF GNLRSVMEID LSYNHLGGLI PQELEMLQNL MLLNVSYNNL 480
  481 AGVVPADNNF TRFSPDSFLG NPGLCGYWLG SSCRSTGHHE KPPISKAAII GVAVGGLVIL 540
  541 LMILVAVCRP HRPPAFKDVT VSKPVRNAPP KLVILHMNMA LHVYDDIMRM TENLSEKYII 600
  601 GYGASSTVYK CVLKNCKPVA IKKLYAHYPQ SLKEFETELE TVGSIKHRNL VSLQGYSLSP 660
  661 VGNLLFYDYM ECGSLWDVLH EGSSKKKKLD WETRLRIALG AAQGLAYLHH DCSPRIIHRD 720
  721 VKSKNILLDK DYEAHLTDFG IAKSLCVSKT HTSTYVMGTI GYIDPEYART SRLNEKSDVY 780
  781 RLWHCSAGAA DWQEASGQRI LSKTASNEVM DTVDPDIGDT CKDLGEVKKL FQLALLCTKR 840
  841 QPSDRPTMHE VVRVLDCLVN PDPPPKPSAH QLPQPSPAVP SYINEYVSLR GTGALSCANS 900
  901 TSTSDAELFL KFGEAISQNM E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle