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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34733385
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSVAPHAV VLGLLLLAGL AAAQRATTPA AAAPAPDPGC NGIQLTYNFV DRTKIRPFVS  60
   61 DKNKQPYAFR ANVTVLNSGT RPLKSWAALV TFGYGEILVG VDGAVLTGGG DLPYNTTEDA 120
  121 GNATSFSGYP HTDLLTPIAT AGDLSQIQAS VGIVGTLFAG PGPFVPLPTA LSLDDPAYAC 180
  181 PAATNVTARV LSTCCVLTPE AEANATAIDA NTTDPTKDFL PRGTGDLVIT YDVLQAYPSS 240
  241 YLALVTLENN AKLGRLDNWR LSWEWRRGEF IYSMKGAHPS EVDTSGCICG APGQYYQSLD 300
  301 FSQVLNCDRK PVILDLPLSR YNDTQIGKID NCCRNGTILP KSMDEAQSKS AFQMQVFKMP 360
  361 PDLNRTKLFP PANFKIVGAS SLNPDYACGQ PVPVSPTAFP DPSGLDSTTL AVATWQVVCN 420
  421 ITTTKGAKPK CCVTFSAYYN DSVIPCSTCA CGCPANRRGP TCSTTAQSML LPPEALLVPF 480
  481 DNRSQKALAW AELKHYNVPR PMPCGDFCGV SINWHVSTDY NKGWSARVTL FNWEDVDMAN 540
  541 WFAAIVMDKA YDGFEKAYSF NGTAVGKNTI FMQGLEGLNY LVKQTNMSGS DYLVPGKQQS 600
  601 VLSFTKKLTP GLNVVAGDGF PTKVFFNGDE CAMPQRIPIS TGFSTRLSSG LALVPFLVAS 660
  661 AFLLLQQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle