YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCAD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGRADFREP NAQVSRPIPD IGGGYIPTEE EWRLFAECHE ECFWFRSVPL AATSMLITQG  60
   61 LISKGILSSH PKYGSIPKLI FACIVGYFAG KLSYVKTCQE KFKKLENSPL GEALRSGELR 120
  121 RSLPPGHYTQ KPKYDSNVSG QSSFGTSPAA DNIEKETLPR YEPIPFSASM NESTPTGITD 180
  181 HIAQGPDPNL EDSPKRKSVT YEELRNKNRE SYGVTLSHKT DPSVRPMQER GPQKEVKVNK 240
  241 YGDTWDE

Type	Start	End	Confidence
Cytoplasmic	1	41	0.57
Transmembrane Helix	42	62	0.54
Non-Cytoplasmic	63	247	0.57