YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSMF1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLEVLFAS AAPAMTCPQD ALVCFLHWEV VTNGYYGLGT GDQPDPNDKK SELLPAEWNS  60
   61 NKELYALRYE SKDGARKLLL KAVSVENGMI INVLEHGTQQ VADLTLNLDD YIDAEDLSDF 120
  121 HRTYKNSEEL RSRIRSGIIT PIHEQWEKVR LSSPPREFPP ATAREVDPLR ISSHHPHTSR 180
  181 QPTWRDPLSP FAVGGEDLDP FGCQRGGMIV DPLRSGFPRA LIDPSSGLPN RLPPGAVPPG 240
  241 ARFDPFGPIG TSPSGPNPDH LPPPGYDDMY L

Type	Start	End	Confidence
Signal Peptide	1	16	0.65
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	271	0.99