YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53733823
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLLTLNDR SFLVLRSSVM GLLSSCTHVP CPPPAPTGAK RALPASGSQV SHGPEPGSQP  60
   61 LKTRTLSGMA SKTTTTVTPK RMAHSPSLQS LKKPVIPKEF GGKVPTVVRQ RYLNLFIEEC 120
  121 LKFCSSNQEA IEKALNEEKV AYDRSPSKNI YLNVAVNTLK KLRGLVPNAV PNLSKASSRR 180
  181 VVSHEVVLGG KLAAKTSFSL SRPSSPRVEE LKGTALYSRL REYLLTPEQL KENGYPFPHP 240
  241 ERPGGAVIFT AEEKKPKDPS CRICCRCGTE YLVSSSGRCV RNEECYYHWG RLRRNRVAGG 300
  301 WETQYMCCSA AVGSVGCQVA KQHVQDGRKE NLEGFVRTFQ KELPEDAHAG VFALDCEMSY 360
  361 TTYGLELTRV TVVDTDMQVV YDTFVKPDNA VVDYNTRFSG VTEADLVDTS ITLRDVQAVL 420
  421 LSMFSADTIL IGHSLESDLL ALKVIHGTVV DTSVLFPHRL GLPYKRSLRN LMADYLRQII 480
  481 QDNVDGHSSS EDASACMHLV IWKIREDAKT KR

Type	Start	End	Confidence
Signal Peptide	1	39	0.73
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	512	0.99