YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4_PHOSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPPGPTAP PGLTQGPSFM ASTTLHSHWN STQKVSTRAQ LLAVSPTASG PEAAAWVPFP  60
   61 TVDVPDHAHY ILGTVILLVG LTGMLGNLTV IYTFCRSRSL RTPANMLIIN LAVSDFLMSF 120
  121 TQAPVFFASS LYKKWLFGET GCEFYAFCGA VLGITSMITL TAIALDRYLV ITRPLATIGM 180
  181 GSKRRTALVL LGIWLYALAW SLPPFFGWSA YVPEGLLTSC SWDYVTFTPQ VRAYTMLLFC 240
  241 FVFFLPLLVI IFCYISIFRA IRETGRACEG WSESPQRRRQ WHRLQSEWKM AKVALIVILL 300
  301 FVLSWAPYST VALVAFAGYS HILTPYMSSV PAVIAKASAI HNPIVYAITH PKYRAAIAQH 360
  361 LPCLGVLLGV SSQRNRPSLS YRSTHRSTLS SQSSDLSWIS APKRQESLGS ESEVGWTDTE 420
  421 ATAVWGAAQP ASGQSSCGQN LEDGMVKAPS SPQAKGQLPS LDLGMQDAP

Type	Start	End	Confidence
Cytoplasmic	1	38	0.63
Transmembrane Helix	39	59	0.66
Non-Cytoplasmic	60	69	0.83
Transmembrane Helix	70	92	0.92
Cytoplasmic	93	105	0.82
Transmembrane Helix	106	126	0.91
Non-Cytoplasmic	127	143	0.86
Transmembrane Helix	144	165	0.93
Cytoplasmic	166	185	0.88
Transmembrane Helix	186	207	0.90
Non-Cytoplasmic	208	232	0.93
Transmembrane Helix	233	257	0.90
Cytoplasmic	258	287	0.98
Transmembrane Helix	288	317	0.76
Non-Cytoplasmic	318	321	0.59
Transmembrane Helix	322	340	0.54
Cytoplasmic	341	469	0.54