YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40353584
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIMRKSHPL MKIVNHAFID LPTPPNISGW WNFGSLLGLC LILQILTGLF LAMHYTPDTL  60
   61 TAFSSVTHIC RDVNYGWLIR YMHANGASLF FICLYIHIGR GIYYGSYLYT ETWNIGILLL 120
  121 FLTMATAFVG YVLPWGQMSF WGATVITNLL SAIPYIGQDL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAMVHLLFL HETGSNNPLG IPSDCGKVPF HPYYTTKDFL GAIMLLMLFL 240
  241 TLVLFFPDKL GDPDNYMPAN PLNTPPHIKP EWYFLFAYAI LRSIPNKLGG VVALALSILV 300
  301 LALLPYLHTS KQRSLSFRPL SQTLFWMLVA DLLLLTWIGG QPVEPPFIII GQVASILYFL 360
  361 ILLLLMPMAG LIENKLLKW

Type	Start	End	Confidence
Cytoplasmic	1	29	0.59
Transmembrane Helix	30	55	0.83
Non-Cytoplasmic	56	80	0.52
Transmembrane Helix	81	104	0.80
Cytoplasmic	105	111	0.47
Transmembrane Helix	112	133	0.90
Non-Cytoplasmic	134	177	0.40
Transmembrane Helix	178	200	0.93
Cytoplasmic	201	228	0.58
Transmembrane Helix	229	247	0.93
Non-Cytoplasmic	248	287	0.63
Transmembrane Helix	288	308	0.90
Cytoplasmic	309	319	0.79
Transmembrane Helix	320	340	0.88
Non-Cytoplasmic	341	347	0.78
Transmembrane Helix	348	371	0.89
Cytoplasmic	372	379	0.84