YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|64966343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMRSFMFL ICPVMVLVFF YYSSGRLQLK NSVQKSQADL DSLLSVGRVV ASVYDKQGFL  60
   61 LKLDKKLPLE LQYKYGNLSK GECKQGFAQA KMTLIYPKFS KPAPMFLDPN YKRLSKISSY 120
  121 PPPFGVRTQE RIIDNILAAT RSYFLGPELD SIPCKKCIII GNGGILFNKS LGTKIDQYDV 180
  181 VVRLNEAPVA GFEKDVGSKT TMRITYPEGA IQRAERYEKS SLFVLSAFKS NDFKWLRHMV 240
  241 YKDRLWRMDG FWKSVARVVP RAPQDMRILN PYFIQEASFR LIGLPHNNGL MGRGNIPTLG 300
  301 TVAITMALHN CDEVAVAGFG YDMNTPHAPL HYYEKLRMSA IKESWTHNIS REKEFLRKLV 360
  361 KAGVIEDLTH GI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	25	0.60
Non-Cytoplasmic	26	372	0.99