YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSRGYQR VDSSGDGGSL LMEEEGDNPH EALLHRNNDD YASTYHHVGV EYDSYEELER  60
   61 HEMDDRVTEI PEGFHRRQRR NLIYGDDVAT DEELRVLRRE ALFGEEVTRA GLGRAEYYED 120
  121 SHLIHSCDKS GHEDIDDESD DESKDEDEEE EETGIRKFAK LVLPHVALVL LTCTYTVIGA 180
  181 LIFYSVEQPH EQMMKEQQLK LIYTRQNEFV DDLIRLAAGN ETKRYEWESL AERHMHNMSD 240
  241 QLFVAFEKYF LTSNEVKKNA ATETWTFSSS IFFAVTVVTT IGYGNPVPVT NIGRIWCILF 300
  301 SLLGIPLTLV TIADLGKFLS EHLVWLYGNY LKLKYLILSR HRKERREHVC EHCHSHGMGH 360
  361 DMNIEEKRIP AFLVLAILIV YTAFGGVLMS KLEPWSFFTS FYWSFITMTT VGFGDLMPRR 420
  421 DGYMYIILLY IILGLAITTM CIDLVGVQYI RKIHYFGRKI QDARSALAVV GGKVVLVSEL 480
  481 YANLMQKRAR NMSREAFIVE NLYVSKHIIP FIPTDIRCIR YIDQTADAAT ISTSSSAIDM 540
  541 QSCRFCHSRY SLNRAFK

Type	Start	End	Confidence
Cytoplasmic	1	161	0.72
Transmembrane Helix	162	184	0.86
Non-Cytoplasmic	185	264	0.66
Transmembrane Helix	265	287	0.80
Cytoplasmic	288	291	0.56
Transmembrane Helix	292	316	0.83
Non-Cytoplasmic	317	367	0.44
Transmembrane Helix	368	389	0.90
Cytoplasmic	390	394	0.39
Transmembrane Helix	395	417	0.80
Non-Cytoplasmic	418	424	0.42
Transmembrane Helix	425	447	0.92
Cytoplasmic	448	557	0.63