YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38304040
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAQGCLPASG QAIFSALTLA SRSFFGALWK SEASRIPPVN LPSVELAVQS NHYCHAQKDS  60
   61 GSHPNSEKQR ARRKLYVASA ICLVFMIGEI IGGYLAQSLA IMTDAAHLLT DFASMLISLF 120
  121 SLWVSSRPAT KTMNFGWQRA EILGALLSVL SIWVVTGVLV YLAVQRLISG DYEIKGDTML 180
  181 ITSGCAVAVN IIMGLALHQS GHGHSHGHSH EDSSQQQQNP SVRAAFIHVV GDLLQSVGVL 240
  241 VAAYIIYFKP EYKYVDPICT FLFSILVLGT TLTILRDVIL VLMEGTPKGV DFTTVKNLLL 300
  301 SVDGVEALHS LHIWALTVAQ PVLSVHIAIA QNVDAQAVLK VARDRLQGKF NFHTMTIQIE 360
  361 SYSEDMKSCQ ECQGPSE

Type	Start	End	Confidence
Cytoplasmic	1	74	0.84
Transmembrane Helix	75	96	0.94
Non-Cytoplasmic	97	104	0.79
Transmembrane Helix	105	125	0.85
Cytoplasmic	126	141	0.84
Transmembrane Helix	142	164	0.91
Non-Cytoplasmic	165	177	0.82
Transmembrane Helix	178	198	0.88
Cytoplasmic	199	223	0.80
Transmembrane Helix	224	247	0.87
Non-Cytoplasmic	248	253	0.74
Transmembrane Helix	254	275	0.85
Cytoplasmic	276	377	0.79