YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51980651
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRQSGWSQ AALLQFLLGM CLMVMPPIQA RSLRFVTLLY RHGDRSPVKA YPKDPYQEEK  60
   61 WPQGFGQLTK EGMLQHWELG QALRQRYHGF LNASYHRQEV YVRSTDFDRT LMSAEANLAG 120
  121 LFPPTEVQHF NPNISWQPIP VHTVPITEDR LLKFPLGPCP RYEQLQNETR QTPEYQNMSI 180
  181 QNAQFLDMVA NETGLMNLTL ETIWNVYDTL FCEQTHGLLL PPWASPQTVQ RLSQLKDFSF 240
  241 LFLFGIHDQV QKARLQGGVL LAQILKNLTL MATTSQFPKL LVYSAHDTTL VALQMALNVY 300
  301 NGKQAPYASC HIFELYQEDN GNFSVEMYFR NDSKKAPWPL TLPGCPHRCP LQDFLRLTEP 360
  361 VIPKDWQKEC QLASDTADTE VIVALAVCGS ILFLLIVLLL TVLFRMQAQP PGYHHVADRE 420
  421 DHA

Type	Start	End	Confidence
Signal Peptide	1	30	0.95
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	380	0.99
Transmembrane Helix	381	404	0.92
Cytoplasmic	405	423	0.97