YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47718012, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAATVVSRI RTGTRWAPVL WLLLSLVAVA AAVAAEQQVP LVLWSSDRDL WAPVADTHEG  60
   61 HITSDMQLST YLDPALELGP RNVLLFLQDK LSIEDFTAYG GVFGNKQDSA FSNLENALDL 120
  121 APSSLVLPAV DWYAISTLTT YLQEKLGASP LHVDLATLKE LKLNASLPAL LLIRLPYTAS 180
  181 SGLMAPREVL TGNDEVIGQV LSTLESEDVP YTAALTAVRP SRVARDVAMV AGGLGRQLLQ 240
  241 TQVASPAIHP PVSYNDTAPR ILFWAQNFSV AYKDEWKDLT SLTFGVENLN LTGSFWNDSF 300
  301 AMLSLTYEPL FGATVTFKFI LASRFYPVSA RYWFTMERLE IHSNGSVAHF NVSQVTGPSI 360
  361 YSFHCEYVSS LSKKGSLLVT NVPSLWQMTL HNFQIQAFNV TGEQFSYASD CAGFFSPGIW 420
  421 MGLLTTLFML FIFTYGLHMI LSLKTMDRFD DHKGPTITLT QIV

Type	Start	End	Confidence
Signal Peptide	1	34	0.99
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	417	0.93
Transmembrane Helix	418	439	0.90
Cytoplasmic	440	463	0.87