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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38512117
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLALLWALG LLGAGSPRPS PPLPNIGGTE EEQQASPERT QSRSLENQVV QDSPPINLTE  60
   61 VLQTGLPETL RIGLELDGEN HILELQQNRD LVPGRPTLVW YQPDGTRMVS EGHSLENCCY 120
  121 RGRVQGRPSS WVSLCACSGI RGLVVLSPER SYTLELGPGD LQRPLIVSRI QDLLLPGHTC 180
  181 APSWHAFVPT EAAPDLLLEQ HRLRRLKRDV VTETKIVELV IVADNSEVRK YPDFQQLLNR 240
  241 TLEVALLLDT FFQPLNVRVA LVGLEAWTQR DLIEMSSNPA VLLDNFLRWR RTDLLPRLPH 300
  301 DSAQLVTVTS FSGPMVGMAI QNSICSPDFS GGVNMDHSTS ILGVASSIAH ELGHSLGLDH 360
  361 DSPGNSCPCP GPAPAKSCIM EASTDFLPGL NFSNCSRWAL EKALLDGMGS CLFEWPPSRA 420
  421 PMSSLCGNMF VDPGEQCDCG FPDECTDPCC DYFTCQLRPG AQCASDGPCC QNCKLQPAGW 480
  481 QCRLPTDDCD LPEFCLGDSS QCPPDIRLGD GEPCASGEAV CMHGRCASYT RQCQSLWGPG 540
  541 AQPAAPLCLQ TANTRGNAFG SCGRSPSGSY MPCNLRDAIC GQLQCQWGRN QPLLGSVQDQ 600
  601 LSEVLEANGT QLNCSWVDLD LGNDVAQPLL ALPGTACGPG LVCIGHRCQP VDLLGAQECR 660
  661 SKCHGHGVCD SSRHCHCDEG WAPPDCMTQL RATSSLTTGL LLSLLLLLVL VLLGASYWYR 720
  721 ARLHQRLCQL KGSSCQYRAA QSGPPERPGP PQRAQQMPGT KQANVSFPVP PSRPLPPNPV 780
  781 PKKLQAELAD RSNPPTRPLP ADPVVWRPKP QGPTKPPPPR KPLPANPQGR PPLGDLPGPG 840
  841 DGSLQLVVPS RPAPPPPAAS SLYL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle