YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LFG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEKSFLVS GDSYPPPNPG YPVGPQAPMP PYVQPPYPGA PYPQAAFQPS PYGQPGYPHG  60
   61 PGPYPQGGYP QGPYPQGGYP QGPYPQSPFP PNPYGQPPPF QDPGSPQHGN YQEEGPPSYY 120
  121 DNQDFPSVNW DKSIRQAFIR KVFLVLTLQL SVTLSTVAIF TFVGEVKGFV RANVWTYYVS 180
  181 YAIFFISLIV LSCCGDFRRK HPWNLVALSI LTISLSYMVG MIASFYNTEA VIMAVGITTA 240
  241 VCFTVVIFSM QTRYDFTSCM GVLLVSVVVL FIFAILCIFI RNRILEIVYA SLGALLFTCF 300
  301 LAVDTQLLLG NKQLSLSPEE YVFAALNLYT DIINIFLYIL TIIGRAKE

Type	Start	End	Confidence
Cytoplasmic	1	141	0.99
Transmembrane Helix	142	163	0.94
Non-Cytoplasmic	164	173	0.88
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	202	0.85
Transmembrane Helix	203	224	0.89
Non-Cytoplasmic	225	229	0.78
Transmembrane Helix	230	250	0.83
Cytoplasmic	251	258	0.70
Transmembrane Helix	259	280	0.94
Non-Cytoplasmic	281	286	0.72
Transmembrane Helix	287	309	0.86
Cytoplasmic	310	320	0.76
Transmembrane Helix	321	344	0.68
Non-Cytoplasmic	345	348	0.54