YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29179482
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSNGETRL QRSRVQQLRD GLTERSLRAK NTVQNISSND VKGFFMRNAF VILTVAAVIV  60
   61 GIILGFGLRP YKMSYREVKY FSFPGELLMR MLQMLVLPLL VSSLITGMAA LDSRASGKMG 120
  121 VRAVVYYTTT TIIAVFIGIV MVLIIHPGKG SKDEFTKHEK IEQVSPADAF LDLIRNMFPP 180
  181 NLVQACTQQF KTQYGKRVVT VKVLVNDTVF SLNNGTQELK REEVIPVLGT VNGINALGLV 240
  241 VFSMCFGLII GNMKEQGQPL RDFFDCLNEA IMRLVAIIMW YAPLGIMFLI AGKIVEMDDL 300
  301 SEMGGQLGMY TITVIIGLLI HAVIVLPLLY FLVTRKNPFV FIAGLLQALI TALGTSSSSA 360
  361 TLPITFKCLE ENNGVDKRVT RFVLPVGATI NMDGTALYEA LAAIFIAQVN DMEMNFGEIL 420
  421 TISITATAAS IGAAGIPQAG LVTKVIVLTS VGLPTDDITL IIAVDWFLDR LRTTTNVLGD 480
  481 SIGAGIVEHL PRHELRSIDA EIGNSVLEEN ETKKSYQLIS QESESDNAKI PDSESKM

Type	Start	End	Confidence
Cytoplasmic	1	47	0.82
Transmembrane Helix	48	68	0.92
Non-Cytoplasmic	69	90	0.76
Transmembrane Helix	91	111	0.93
Cytoplasmic	112	122	0.77
Transmembrane Helix	123	145	0.93
Non-Cytoplasmic	146	232	0.82
Transmembrane Helix	233	253	0.90
Cytoplasmic	254	270	0.82
Transmembrane Helix	271	292	0.91
Non-Cytoplasmic	293	308	0.75
Transmembrane Helix	309	332	0.90
Cytoplasmic	333	338	0.73
Transmembrane Helix	339	360	0.81
Non-Cytoplasmic	361	418	0.65
Transmembrane Helix	419	441	0.60
Cytoplasmic	442	537	0.49