YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29417540
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASNVDAKG SEEEVPLKQS SSRKEAVNPA DGNAAVSIKI RTRLPDFLNS VNLKYVKLGY  60
   61 HYVITHALYL LMVPLLMVVA AEFGRLGHED FGQLWEQLQF NLVSVLVCSG TLVFGGTLYF 120
  121 MSRPHPVYLV DFACYKPIDE RKVTREIFME CSRITGNFNE KSLEFQRKIL ERSGLGQDTY 180
  181 LPPAVLRVPP NPNMHEARLE AETVMFGALD ELFEKTGVKP KEVGILVVNC SLFNPTPSLS 240
  241 AMIVNHYKMR GNIKSLNLGG MGCSAGVISI DLARDLLQVH NSTYAVVVSM ENITLNWYMG 300
  301 NDRSKMLSNC IFRMGGAAIL LSNKMKERRR AKYELVHTVR THKGADPKCF SCVVQEEDDE 360
  361 GKIGVSLSRD LMGVAGDALK ANITTLGPLV LPLSEQILFF ATLVGRKLFK MKIKPYIPDF 420
  421 KLAFEHFCIH AGGRAVLDEL EKNLNLTEWH MEPSRMTLYR FGNTSSSSLW YELAYTEAKG 480
  481 RVRRGDRLWQ IAFGSGFKCN SAVWRALRTV KSPKQSPWAD EIDSFPVEVP AFTSMLN

Type	Start	End	Confidence
Cytoplasmic	1	61	0.87
Transmembrane Helix	62	81	0.92
Non-Cytoplasmic	82	99	0.75
Transmembrane Helix	100	120	0.93
Cytoplasmic	121	254	0.86
Transmembrane Helix	255	273	0.63
Non-Cytoplasmic	274	305	0.71
Transmembrane Helix	306	322	0.30
Cytoplasmic	323	537	0.52