YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15222270, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEATTVPK FQEPDLRQVS QTPDFKPEIA HDGLKFWQFM IAGSIAGSVE HMAMFPVDTI  60
   61 KTHMQALRPC PLKPVGIREA FRSIIQKEGP SALYRGIWAM GLGAGPAHAV YFSFYEVSKK 120
  121 YLSAGDQNNS VAHAMSGVFA TISSDAVFTP MDMVKQRLQM GEGTYKGVWD CVKRVLREEG 180
  181 IGAFYASYRT TVLMNAPFTA VHFATYEAAK KGLMEFSPDR ISDEEGWLVH ATAGAAAGGL 240
  241 AAAVTTPLDV VKTQLQCQGV CGCDRFTSSS ISHVLRTIVK KDGYRGLLRG WLPRMLFHAP 300
  301 AAAICWSTYE GVKSFFQDFN VDSNTA

Type	Start	End	Confidence
Cytoplasmic	1	91	0.74
Transmembrane Helix	92	112	0.80
Non-Cytoplasmic	113	130	0.79
Transmembrane Helix	131	149	0.67
Cytoplasmic	150	294	0.63
Transmembrane Helix	295	309	0.37
Non-Cytoplasmic	310	326	0.64