YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|240256209, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLGYCLKE KKTCVRWVEI YFDDCLCNLN DDVSFALGIA SLLCWGVAEI PQVITNFRTK  60
   61 SSNGVSLSFL LAWVAGDIFN LVGCLLEPAT LPTQFYTALL YTVSTVVLVI QTIYYDYIYK 120
  121 LCRHRRTKIC QKDEEDEEKR PLKPPKTMGS AISIPGGSYK DSSRREFYYT SARSLAGSGT 180
  181 PPLRTSYFRV AKSGPSALAI DNDGSSSDED ETMSTCPVIT AKTITKPRPI PRQAGFGTFL 240
  241 AASASLPLQA KSLAEKYAHA SSRRLLNERI VEHSALGQWL GWLMAAIYMG GRIPQIWLNI 300
  301 KRGSVEGLNP LMFIFALVAN ATYVGSILVR TTEWDNIKPN LPWLLDAIVC VVLDLFIILQ 360
  361 YIYYKYCRIK SLESREEDAY GDYVEASKTF VS

Type	Start	End	Confidence
Cytoplasmic	1	66	0.70
Transmembrane Helix	67	86	0.90
Non-Cytoplasmic	87	96	0.72
Transmembrane Helix	97	118	0.92
Cytoplasmic	119	233	0.97
Transmembrane Helix	234	250	0.61
Non-Cytoplasmic	251	274	0.58
Transmembrane Helix	275	296	0.75
Cytoplasmic	297	307	0.63
Transmembrane Helix	308	329	0.87
Non-Cytoplasmic	330	342	0.67
Transmembrane Helix	343	364	0.92
Cytoplasmic	365	392	0.77