YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHCA2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST  60
   61 PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW AMLGAAGIFI PEFLTKIGIL 120
  121 NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD 180
  181 VGYPGGLWFD PLGWGSGSPA KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA 240
  241 HLADPGHATI FAAFTPK

Type	Start	End	Confidence
Signal Peptide	1	21	0.94
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	257	0.97