YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68534312, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHGNSLFL RESGAGGGCL QGLQDSLQQR ALRTRLRLQT MTREHVRRFL RRNAFILLTV  60
   61 SAVIIGVSLA FALRPYQLSY RQIKYFSFPG ELLMRMLQML VLPLIVSSLV TGMASLDNKA 120
  121 TGRMGMRAAV YYMVTTVIAV FIGILMVTII HPGKGSKEGL HREGRIETVP TADAFMDLVR 180
  181 NMFPPNLVEA CFKQFKTQYS TRVVTRTIVR TDNGSELGAS ISPPSSAENE TSILENVTRA 240
  241 LGTLQEVISF EETVPVPGSA NGINALGLVV FSVAFGLVIG GMKHKGRVLR DFFDSLNEAI 300
  301 MRLVGIIIWY APVGILFLIA GKILEMEDMA VLGGQLGMYT LTVIVGLFLH AGGVLPLIYF 360
  361 LVTHRNPFPF IGGILQALIT AMGTSSSSAT LPITFRCLEE GLGVDRRITR FVLPVGATVN 420
  421 MDGTALYEAL AAIFIAQVNN YELNLGQITT ISITATAASV GAAGIPQAGL VTMVIVLTSV 480
  481 GLPTEDITLI IAVDWFLDRL RTMTNVLGDS IGAAVIEHLS QRELELQEAE LTLPSLGKPY 540
  541 KSLMAQEKGA SRGRGGNESV M

Type	Start	End	Confidence
Cytoplasmic	1	52	0.96
Transmembrane Helix	53	73	0.94
Non-Cytoplasmic	74	93	0.91
Transmembrane Helix	94	116	0.89
Cytoplasmic	117	128	0.90
Transmembrane Helix	129	150	0.95
Non-Cytoplasmic	151	261	0.98
Transmembrane Helix	262	282	0.92
Cytoplasmic	283	299	0.94
Transmembrane Helix	300	321	0.91
Non-Cytoplasmic	322	337	0.85
Transmembrane Helix	338	361	0.90
Cytoplasmic	362	369	0.78
Transmembrane Helix	370	393	0.73
Non-Cytoplasmic	394	447	0.63
Transmembrane Helix	448	482	0.56
Cytoplasmic	483	561	0.59