YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30909101
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVNRHSTAIG RVWLSVIFIF RIMVLVVAAE SVWGDEKSSF ICNTLQPGCN SVCYDQFFPI  60
   61 SHVRLWSLQL ILVSTPALLV AMHVAHQQHI EKKMLRLEGH GDPLHLEEVK RHKVHISGTL 120
  121 WWTYVISVVF RLLFEAVFMY VFYLLYPGYA MVRLVKCEAY PCPNTVDCFV SRPTEKTVFT 180
  181 VFMLAASGIC IILNVAEVVY LIIRACARRA QRRSNPPSRK GSGFGHRLSP EYKQNEINKL 240
  241 LSEPDGSLKD ILRRSPGTGA GLAEKSDRCS AC

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.90
Non-Cytoplasmic	30	64	0.93
Transmembrane Helix	65	86	0.93
Cytoplasmic	87	119	0.97
Transmembrane Helix	120	142	0.94
Non-Cytoplasmic	143	180	0.95
Transmembrane Helix	181	203	0.94
Cytoplasmic	204	272	0.99