YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30840139
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSYGLPSENG GLQHRPRKDL GPRHNAHPTQ IYGHHKEQYS YQAQDRGIPK KTDSSSTVDS  60
   61 LDEDHYSKCQ DCVHRLGRVL RRKLGEDWIF LVLLGLLMAL VSRCMDYVSA KSLQAYKWTY 120
  121 AQMQPSLPLQ YLAWVTFPLI LILFSALFCQ LISPQAVGSG IPEMKTILRG VVLKEYLTLK 180
  181 AFVAKVVALT AGLGSGIPVG KEGPFVHIAS ICAAVLSKFM SMFSGVYEEC CSASRSPLPT 240
  241 LPFGITGEDS LQPPSVPLCS ASWQCGTRML SLLLLCSELI SGWISPLT

Type	Start	End	Confidence
Cytoplasmic	1	87	0.98
Transmembrane Helix	88	109	0.87
Non-Cytoplasmic	110	130	0.94
Transmembrane Helix	131	152	0.89
Cytoplasmic	153	175	0.86
Transmembrane Helix	176	197	0.75
Non-Cytoplasmic	198	204	0.66
Transmembrane Helix	205	227	0.71
Cytoplasmic	228	288	0.73