YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cdr-5
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILEIIAGII IILFIFNLLH TIYKTFLTTP TVNATPKIHK RDYQKDVVYL YQFPRIDTVP  60
   61 NLSSFCLKTE TFLRAFKIPH EVIETGSLRS RNGTLPFVEL NGEHIPDSDL IEVRLRKHFQ 120
  121 IPNLSAEDES HATALCRLAD NHLLSIIIKY KAAEDAWYSA LLRGVPGPNC LKTILKPIVR 180
  181 KLFMKKVHER TGGAIGNFTE DEAEMLCHKD LQAIQDSIKG KYLFGDKITS ADCTVFGEVA 240
  241 SAYYPFPNKF SRIIDSHYPK LHEYCDRIIE ELYPNDFSI

Type	Start	End	Confidence
Cytoplasmic	1	4	0.60
Transmembrane Helix	5	23	0.75
Non-Cytoplasmic	24	279	0.81