YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58376053, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMASSNNALY LRQQMAALLG STSTSIKFIC IATLVGYLIS FSERISVMLC VTPGYLMPPT  60
   61 FWVWTIFTYF FIEQHFWEVL VDLVTVGLCG KLIEPSWGQM EMLHYFAITN TGVAILTSLY 120
  121 YLLYSMATAD AEILFNVRIY GLAGMNAAIS VAVTQIMPDH LIARTPIGKF SNRNVPLTVV 180
  181 IASILLWAVG LLDGTYPAMF ASGLYVSWVY LRFYQRHSNG TRGDSAENFR FASFFPNVLQ 240
  241 PFIAIFANPV YLCCLRIGLV KRLSPPQSNS GSLHSVSVQL PGVDPHDMER RRQIALKALS 300
  301 ERLSKTTDSS RQNTVPKSFP Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.62
Transmembrane Helix	16	39	0.85
Cytoplasmic	40	46	0.55
Transmembrane Helix	47	68	0.77
Non-Cytoplasmic	69	74	0.55
Transmembrane Helix	75	93	0.61
Cytoplasmic	94	102	0.73
Transmembrane Helix	103	124	0.92
Non-Cytoplasmic	125	136	0.72
Transmembrane Helix	137	157	0.84
Cytoplasmic	158	174	0.74
Transmembrane Helix	175	200	0.79
Non-Cytoplasmic	201	237	0.77
Transmembrane Helix	238	260	0.81
Cytoplasmic	261	321	0.88