YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110739253, gi...
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALCCCPTT IIVSGKVSSR IKTAGPLPRI NPFKNQKRLI TERRNLIVKS IIEDREAIDV  60
   61 KNDNFKAEEE LSEDKVEDTD RLMSRGINAA IVLAAGTVAV TKLLTIDHDY WQGWTLYEIL 120
  121 RYAPEHNWFA YEQILKTNPV LTKMAISGIV YSLGDWIAQC YEGKPLFEFD RTRVLRSGLV 180
  181 GFTLHGSLSH YYYQFCEALF PFQEWWVVPA KVAFDQTVWS AIWNSIYFTV LGLLRFQSPA 240
  241 DIFSEIKTTF LPMLTAGWKL WPLAHLVTYG VIPVDQRLLW VDCIELIWVT ILSTYSNEKA 300
  301 EAQASEETNS SSHSSED

Type	Start	End	Confidence
Cytoplasmic	1	86	0.53
Transmembrane Helix	87	106	0.37
Non-Cytoplasmic	107	317	0.64