YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30793847, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGISSFWG PVTSTIECCE MNYAYSSYIA EFYNTISNVP GILLALIGLV NALRQRFEKR  60
   61 FSILHISNMI LAIGSMLYHA TLQHVQQQSD ETPMVWEILL YMYILYSPDW HYRSTMPTFL 120
  121 FLYGAAFAIV HAYLRFGIGF KVHYVILCLL CIPRMYKYYI HTEDTAAKRI AKWYVATILV 180
  181 GSICWFCDRV FCKTISQWPV NPQGHALWHV FMSFNSYCAN TFLMFCRAQQ RGWNPKVKYF 240
  241 LGVLPYVKIE KPKTQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.78
Transmembrane Helix	32	53	0.77
Cytoplasmic	54	60	0.94
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	92	0.85
Transmembrane Helix	93	107	0.47
Cytoplasmic	108	114	0.37
Transmembrane Helix	115	135	0.83
Non-Cytoplasmic	136	139	0.43
Transmembrane Helix	140	158	0.58
Cytoplasmic	159	169	0.82
Transmembrane Helix	170	192	0.79
Non-Cytoplasmic	193	204	0.88
Transmembrane Helix	205	226	0.88
Cytoplasmic	227	255	0.93