YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRMSNTVIG FLNILTLISS IVLLGSALWM GRSKTTCEHF LQKPLLILGL AILILSVAGL  60
   61 VGACCDVAWV LWVYLFFMVF IIVALMGLTL FGFIVTSHSG GVVVDGRVYK EFKLEAYHPW 120
  121 LKTRVVDTNY WVTIKTCLLG SVTCSKLALW TPLDYLQKDL SPLQSGCCKP PTSCVYNTDT 180
  181 VIQQDPDCYR WNNAATVLCY DCDTCRAGVL ETVRRDWHKL SLVNVIVVIF LIAVYCVGCC 240
  241 AFKNAKRPQH YGFPYGRYGM SKSRPGWEQS WSRWWHGRDR Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.65
Transmembrane Helix	8	31	0.90
Cytoplasmic	32	44	0.61
Transmembrane Helix	45	65	0.92
Non-Cytoplasmic	66	70	0.42
Transmembrane Helix	71	95	0.86
Cytoplasmic	96	219	0.66
Transmembrane Helix	220	245	0.80
Non-Cytoplasmic	246	281	0.66