YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	221	0.99
Transmembrane Helix	222	244	0.89
Cytoplasmic	245	287	0.96
Transmembrane Helix	288	314	0.85
Non-Cytoplasmic	315	322	0.72
Transmembrane Helix	323	345	0.90
Cytoplasmic	346	357	0.87
Transmembrane Helix	358	382	0.84
Non-Cytoplasmic	383	391	0.62
Transmembrane Helix	392	416	0.80
Cytoplasmic	417	441	0.90
Transmembrane Helix	442	463	0.92
Non-Cytoplasmic	464	482	0.79
Transmembrane Helix	483	506	0.92
Cytoplasmic	507	515	0.78
Transmembrane Helix	516	536	0.91
Non-Cytoplasmic	537	552	0.90
Transmembrane Helix	553	574	0.94
Cytoplasmic	575	589	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSSSAAVL VFLLLVSLLT PTFASDSDHK YQAEEQVTLW VNKVGPYNNP QETYNYYSLP  60
   61 FCRPSGNNVH KWGGLGEVLG GNELIDSEIA IKFMKNVERS VICPLELDEA KVKHFKDAIE 120
  121 SSYWFEFFMD DLPLWGFVGE LHPDKNSENG KHVLYTHKNI VVKYNKDQII HVNLTQDNPR 180
  181 PLEAGKKMDL TYSVQWIPTN VTFARRFDVY LDYPFFEHQI HWFSIFNSFM MVIFLTGLVS 240
  241 MILMRTLRND YAKYAREDDD LESLERDVSE ESGWKLVHGD VFRPASSLVL LSAVVGTGAQ 300
  301 LALLVLLVIL MAIVGTLYVG RGAIVTTFIV CYALTSFVSG YVSGGMYSRS GGKHWIKCMV 360
  361 LTASLFPFLC FGIGFLLNTI AIFYGSLAAI PFGTMVVVFV IWGFISFPLA LLGTVVGRNW 420
  421 SGAPNNPCRV KTIPRPIPEK KWYLTPSVVS LMGGLLPFGS IFIEMYFVFT SFWNYKVYYV 480
  481 YGFMLLVFVI LVIVTVCVTI VGTYFLLNAE NYHWQWTSFF SAASTAVYVY LYSIYYYYVK 540
  541 TKMSGFFQTS FYFGYTMMFC LGLGILCGAV GYLGSNLFVR RIYRNIKCD