YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55243942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTVEKNEY PKASNALVIG AVLSYVAAVF LLMSFCSPYW IVSYPESFSS FKNMGLWEYC  60
   61 FRDFTYPYYQ FPKQFNGCHH IFSEEYYVIR EYLLPGWLMV VQGFVTISFL FTFGSLIIMA 120
  121 CEIVRWPLKF VLRYEWLLSS ISFAGIASSS FFMFLAVAIF GGNAYRRDWL MYPKFNVLSW 180
  181 SYELAVVSFM ILGLAALLLY KESRKSYEMR REAKNLVMQM QMHEPGYHPS HHTSRSLHSG 240
  241 GYI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.94
Transmembrane Helix	17	41	0.87
Non-Cytoplasmic	42	99	0.97
Transmembrane Helix	100	121	0.88
Cytoplasmic	122	135	0.82
Transmembrane Helix	136	160	0.89
Non-Cytoplasmic	161	179	0.90
Transmembrane Helix	180	200	0.96
Cytoplasmic	201	243	0.99