YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	136	0.73
Transmembrane Helix	137	154	0.71
Non-Cytoplasmic	155	163	0.68
Transmembrane Helix	164	186	0.54
Cytoplasmic	187	204	0.57
Transmembrane Helix	205	228	0.81
Non-Cytoplasmic	229	232	0.50
Transmembrane Helix	233	250	0.52
Cytoplasmic	251	253	0.54
Transmembrane Helix	254	277	0.74
Non-Cytoplasmic	278	280	0.48
Transmembrane Helix	281	300	0.65
Cytoplasmic	301	329	0.74
Transmembrane Helix	330	350	0.88
Non-Cytoplasmic	351	355	0.62
Transmembrane Helix	356	374	0.58
Cytoplasmic	375	386	0.64
Transmembrane Helix	387	406	0.70
Non-Cytoplasmic	407	407	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFGLSRVS RRLLKSSVSV TPSSSSALLQ SQHKSLSNPV TTHYTNPFTK CYPSWNDNYQ  60
   61 VWSKGRELHQ EKFFGVGWNY RLICGMSSSS SVLEGKPKKD DKEKSDGVVV KEASWIDLYL 120
  121 PEEVRGYAKL ARLDKPIGTW LLAWPCMWSI ALAADPGSLP SFKYMALFGC GALLLRGAGC 180
  181 TINDLLDQDI DTKVDRTKLR PIASGLLTPF QGIGFLGLQL LLGLGILLQL NNYSRVLGAS 240
  241 SLLLVFSYPL MKRFTFWPQA FLGLTINWGA LLGWTAVKGS IAPSIVLPLY LSGVCWTLVY 300
  301 DTIYAHQDKE DDVKVGVKST ALRFGDNTKL WLTGFGTASI GFLALSGFSA DLGWQYYASL 360
  361 AAASGQLGWQ IGTADLSSGA DCSRKFVSNK WFGAIIFSGV VLGRSFQ