YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30725620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLLENHQF ATHAIAASAS VSLGTALAYP LDTIKTIIQV GSGPNKKLSS FQVFNRVLRF  60
   61 SGYSGLYSGL GSLTLGRISG FGARFGVYEI LTAFYKDGRH DNYVSVGEAF LAGLVGGAAE 120
  121 TVMTSPFELI KVRKQVTAAS RAPNASAVAE TAPVSPMITK LLRRYTLDVK SLTQTVSLLS 180
  181 VLNHKHPNMT AALQEYPWMM TGTGNPPSAM DVKRPLDVAS LEGYRALWRN LRSGLIRDCI 240
  241 YGGVFFSTWQ FLHEAMVGWK AVGMNPLPSS EEEVGPLSPV AISLAAGISG AVAAAASHSF 300
  301 DTARTRAQCV ILPKYTAKER KFLKWNKPGK RLERWTGIHP TDRNLLFRGI GMRMARSSVA 360
  361 STVIVGSYYL AVDLLVPK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	31	0.56
Non-Cytoplasmic	32	59	0.50
Transmembrane Helix	60	81	0.60
Cytoplasmic	82	233	0.77
Transmembrane Helix	234	253	0.82
Non-Cytoplasmic	254	276	0.86
Transmembrane Helix	277	297	0.89
Cytoplasmic	298	353	0.93
Transmembrane Helix	354	372	0.75
Non-Cytoplasmic	373	378	0.62