YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALTFLNPN PRLPSPLFLA KSTPESALSR RSRAFSSSNS YPWRPNLRFN GFKLKSATVP  60
   61 ENVEGGDLES GSLVKGLKLG GMFGVWYLLN IYYNIFNKQV LRVYPYPATV TAFQLGCGTL 120
  121 MIAIMWLLKL HPRPKFSPSQ FTVIVQLAVA HTLGNLLTNV SLGRVNVSFT HTIKAMEPFF 180
  181 TVLLSVLLLG EWPSLWIVCS LLPIVAGVSL ASFTEASFNW IGFCSAMASN VTNQSRNVLS 240
  241 KKFMVGKDAL DNINLFSIIT IISFILLVPL AILIDGFKVT PSHLQVATSQ GLSVKEFCIM 300
  301 SLLAGVCLHS YQQVSYMILE MVSPVTHSVG NCVKRVVVIT SSILFFKTPV SPLNSIGTAT 360
  361 ALAGVYLYSR AKRVQVKPNP KMS

Type	Start	End	Confidence
Cytoplasmic	1	75	0.89
Transmembrane Helix	76	96	0.75
Non-Cytoplasmic	97	107	0.70
Transmembrane Helix	108	128	0.93
Cytoplasmic	129	140	0.70
Transmembrane Helix	141	162	0.59
Non-Cytoplasmic	163	170	0.45
Transmembrane Helix	171	190	0.55
Cytoplasmic	191	191	0.42
Transmembrane Helix	192	218	0.72
Non-Cytoplasmic	219	252	0.58
Transmembrane Helix	253	277	0.86
Cytoplasmic	278	291	0.59
Transmembrane Helix	292	312	0.63
Non-Cytoplasmic	313	349	0.76
Transmembrane Helix	350	369	0.75
Cytoplasmic	370	383	0.85