YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30725586, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKENQLETT NCGVNDHDCP PVKNEELAAE ARYSTDSDSG LPTCRVCHSA ESDRRGDTAL  60
   61 GFLGITPPVP EARKSNVDGT ADDVSKATES ELKNSVVKSN GRESGFIELT SPDAEVFICT 120
  121 NDIEMGIQQH QDALLELGCS CKNELALVHY ACALKWFLNH GSTVCEICGH PAENIKTADF 180
  181 NKVVIALRDY TAIRERTADG GDQIPVLPVN TDSTIDSDEV AVIRRQRLSE ITSWFGPHSL 240
  241 NNNNNNNSSV AAIPDQPLGV VNFDILPMEN RATKWAVEGT GILLATGLLT VTLVWLIAPR 300
  301 VGKKTARSGL HILLGGLCAL TIVIFFRFVV LTRIRYGPAR YWAILFIFWF LVFGIWASRS 360
  361 NASHNSP

Type	Start	End	Confidence
Cytoplasmic	1	274	0.70
Transmembrane Helix	275	298	0.88
Non-Cytoplasmic	299	308	0.61
Transmembrane Helix	309	331	0.92
Cytoplasmic	332	338	0.66
Transmembrane Helix	339	358	0.93
Non-Cytoplasmic	359	367	0.64