YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPC2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSISFNPR GDNELPDDRS SDVGYAANDR RLAYSRSFQQ SHGPRTPAVT EAAKPFLDRT  60
   61 VSSIDMPPDI YSVDGSDVFF GEGKDVDMAK VSVLEMVWEV FGVVTSGNRQ MKRLFLLIAL 120
  121 NVLYSTTELS IGIFTGRVGL VSDAFHLTFG CGLLTFSLFA MATSRKKPDH AYSYGYKRLE 180
  181 VLSAFTNALF LMFMSFSLAV EALHAFIQDE SEHKHYLIVS AVTNLLVNLL GVWFFRNYAR 240
  241 VNIAYRKAED MNYHSVCLHV ISDSIRSAGL ILASWLLSLG VENAEVLCLG LVSVTVFMLV 300
  301 MPLFKATGGV LLQMAPPNIP SSALSKCLRQ ITSREDVTEV LQARFWEVVP GHTVGSLRLQ 360
  361 VKSGIDERPL LQYVYDVYHD LGVQDLTLQT DYT

Type	Start	End	Confidence
Cytoplasmic	1	113	0.99
Transmembrane Helix	114	136	0.91
Non-Cytoplasmic	137	143	0.83
Transmembrane Helix	144	163	0.96
Cytoplasmic	164	183	0.89
Transmembrane Helix	184	205	0.92
Non-Cytoplasmic	206	214	0.85
Transmembrane Helix	215	235	0.95
Cytoplasmic	236	255	0.90
Transmembrane Helix	256	277	0.86
Non-Cytoplasmic	278	285	0.71
Transmembrane Helix	286	306	0.88
Cytoplasmic	307	393	0.91