YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.93
Transmembrane Helix	30	51	0.91
Non-Cytoplasmic	52	60	0.72
Transmembrane Helix	61	83	0.91
Cytoplasmic	84	93	0.84
Transmembrane Helix	94	115	0.88
Non-Cytoplasmic	116	154	0.85
Transmembrane Helix	155	176	0.93
Cytoplasmic	177	184	0.86
Transmembrane Helix	185	207	0.90
Non-Cytoplasmic	208	220	0.87
Transmembrane Helix	221	242	0.90
Cytoplasmic	243	260	0.89
Transmembrane Helix	261	285	0.91
Non-Cytoplasmic	286	306	0.93
Transmembrane Helix	307	330	0.92
Cytoplasmic	331	356	0.95
Transmembrane Helix	357	379	0.86
Non-Cytoplasmic	380	384	0.83
Transmembrane Helix	385	406	0.91
Cytoplasmic	407	462	0.98
Transmembrane Helix	463	484	0.92
Non-Cytoplasmic	485	490	0.86
Transmembrane Helix	491	513	0.92
Cytoplasmic	514	526	0.88
Transmembrane Helix	527	548	0.91
Non-Cytoplasmic	549	554	0.75
Transmembrane Helix	555	574	0.93
Cytoplasmic	575	600	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLVRRKQV DSVHLIKNDG PHQLAKKLSA VDLVAIGVGT TIGAGVYILV GTVAREHTGP  60
   61 ALAVSFFIAG VAAALSACCY AELASRCPSA GSAYHYAYIC LGEGIAWLVG WALVLDYTIG 120
  121 GSAIARGITP NLASFFGGLD NLPVFLARQT IPGVGIVVDP CAALLIMIVT ILLCFGIKES 180
  181 STVQAIVTSV NVCTLVFIIV VGGYLACKTG WVGYDLPSGY FPFGLNGILA GSAVVFFSYI 240
  241 GFDTVTSTAE EVKNPQRDLP LGIGIALLIC CILYMLLSVV IVGLVPYYSL NPDTPISSAF 300
  301 GDSGMQWAAY ILTTGAITAL CASLLGSLLA QPRIFMAMAR DGLLPAFFSE ISPRTQVPVK 360
  361 STIAIGVLAA ALAFFMDVAQ LSEMVSVGTL MAFTAVAVCV LVLRYVPPDG VPLSSSSQTL 420
  421 SDTDESRAET ENFLVDAIES SDSPLLGNET ARDEKYFGKR RKIAAWSIAL VCIGVLGLAS 480
  481 AASAERLPSF PRFTICGVSA VILLGSLITL GYIDEDEERH NFGHKGGFLC PFVPYLPVLC 540
  541 ILINTYLIIN IGAGTWIRVL IWLLIGSMIY IFYGRSHSLL NNAVYVPTMT CTRKTTDHLA 600
  601