YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30692148
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.89
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	347	0.99
Transmembrane Helix	348	370	0.93
Cytoplasmic	371	379	0.91
Transmembrane Helix	380	402	0.91
Non-Cytoplasmic	403	422	0.87
Transmembrane Helix	423	446	0.88
Cytoplasmic	447	465	0.91
Transmembrane Helix	466	487	0.90
Non-Cytoplasmic	488	511	0.93
Transmembrane Helix	512	535	0.91
Cytoplasmic	536	555	0.92
Transmembrane Helix	556	578	0.92
Non-Cytoplasmic	579	589	0.80
Transmembrane Helix	590	610	0.82
Cytoplasmic	611	668	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSMMLCFI LGCSIANTED TLAASQFCAF NGSTRSFICL GNKVHEIPRR IPTNTTFVEI  60
   61 KLTQISVFRR AALSELHELK RIVVSENGAL ERIEALAFFN LTELEEITIT KSKNLVMHKD 120
  121 AFWRLPKLRY LTISNTGLKI LPDFSQINSA ALEFLFDLQD NMHIERIPSN AFLGLTNATI 180
  181 TELRLTKNGI REIDSHAFNG TKIGKLFLMG NQQLNHIHSY AFKGAEGPVV LDISRTAVHT 240
  241 LPESMLKTLK LLMAVSVYSL RKLPSLELFT ELTQANLTYP SHCCAFKNFK KHKSVKNQMC 300
  301 NVTGAHEEPD FFNFFNDHCK DVIEVTCYPT PDAFNPCEDI MGFTFLRVLI WFISVLAIVG 360
  361 NTVVLLVLLT SRYKLTVPRF LMCHLAFADL CMGIYLLLIA AVDIHTQSRY YNYGIDWQTG 420
  421 AGCHVAGFFT VFSSELSVYT LTAITLERWH TITYAMQLER QMRLRHACLV MATGWLFSLL 480
  481 TALTPMFGVS SYSKTSICLP MDVETLLSQG YVVLLLLLNA AAFLVVCVCY TLIYLTVRNP 540
  541 AFVPANADMR IAKRMAVLIF TDFLCMAPIS FFAISAAFKL PLITVSHAKV LLVLFYPINS 600
  601 CSNPFLYAFF TKTFKRDFFI LTSRFGCFKR RAHIYRTEIS SGQNGAVVPS PKTSDGTLYS 660
  661 LVHIAQVH